hapROH
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Contents:
Overview
Installation
hapROH
hapCon
hapCon_ROH
Frequently Asked Questions (FAQ)
API Reference
hapROH
Welcome to the Documentation of hapROH and hapCon
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Welcome to the Documentation of hapROH and hapCon
Contents:
Overview
Citing
Contact
Acknowledgments
Installation
Upgrading
c Extension
Dependencies
hapROH
Scope of the Method
Getting started
Download reference Data
Example Use Case: Vignettes
Development
hapCon
Application range of hapCon
Input
Getting started
Example Use Case: Vignettes
hapCon_ROH
Introduction
Input
Usage
Scope of this method
Example Usage 1: Identify ROH blocks for contaminated samples
Example Usage 2: Identify false positive ROH blocks
Frequently Asked Questions (FAQ)
I have a .bam, what should I do?
With the
roh.csv
and
roh_full.csv
tables, what is the difference between the
length
/
lengthM
,
start
/
startM
and
end
/
endM
columns?
Why is the value of
lengthM
sometimes multiplied per 100?
How can I implement hapROH for another set of SNPs, such as all 1000Genome SNPs?
API Reference
hapsburg
Indices and tables
Index
Module Index
Search Page
Read the Docs
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