hapROH

Contents:

  • Overview
  • Installation
  • hapROH
  • hapCon
  • hapCon_ROH
  • Frequently Asked Questions (FAQ)
  • API Reference
    • hapsburg
hapROH
  • API Reference
  • View page source

API Reference

This page contains auto-generated API reference documentation [1].

  • hapsburg
    • hapsburg.PackagesSupport
      • hapsburg.PackagesSupport.fit_ne
      • hapsburg.PackagesSupport.h5_python
        • hapsburg.PackagesSupport.h5_python.h5_functions
      • hapsburg.PackagesSupport.hapsburg_run
      • hapsburg.PackagesSupport.loadEigenstrat
        • hapsburg.PackagesSupport.loadEigenstrat.loadEigenstrat
        • hapsburg.PackagesSupport.loadEigenstrat.saveHDF5
      • hapsburg.PackagesSupport.parallel_runs
        • hapsburg.PackagesSupport.parallel_runs.helper_functions
      • hapsburg.PackagesSupport.pp_individual_roh_csvs
      • hapsburg.PackagesSupport.roh_expectations
      • hapsburg.PackagesSupport.simData
      • hapsburg.PackagesSupport.sqrt_scale
    • hapsburg.emissions
    • hapsburg.emissions_lowmem
    • hapsburg.figures
      • hapsburg.figures.plot_bars
      • hapsburg.figures.plot_ibdx
      • hapsburg.figures.plot_individual_roh
      • hapsburg.figures.plot_posterior
      • hapsburg.figures.plot_timelines
    • hapsburg.func
    • hapsburg.hapCONX
    • hapsburg.hapCon_ROH
    • hapsburg.hapROH_WGS
    • hapsburg.hmm_inference
    • hapsburg.postprocessing
    • hapsburg.preprocessing
    • hapsburg.preprocessing_lowmem
    • hapsburg.transitions
[1]

Created with sphinx-autoapi

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